Open Source vs. Closed: The Battle for Biological AI
Introduction: The Open Science Paradox In May 2024, Google DeepMind published AlphaFold 3 in Nature, describing a system that could predict the structure of protein complexes with DNA, RNA, ligands, and small molecules—a dramatic leap beyond AlphaFold 2’s protein-only predictions. But there was a catch: the code wasn’t released. For six months, researchers could read about the breakthrough but couldn’t reproduce it, build on it, or verify the claims independently. ...